From: Raspbian automatic forward porter Date: Sun, 1 Feb 2026 14:12:53 +0000 (+0000) Subject: Merge version 2.16.0+ds-7+rpi1 and 2.17.0+ds-6 to produce 2.17.0+ds-6+rpi1 X-Git-Tag: archive/raspbian/2.17.0+ds-6+rpi1^0 X-Git-Url: https://dgit.raspbian.org/%22http:/www.example.com/cgi/%22https:/%22bookmarks:///%22http:/www.example.com/cgi/%22https:/%22bookmarks:/?a=commitdiff_plain;h=2c5a11c51ae3c41e89abadb5b68873c70b9cc9c5;p=ncbi-blast%2B.git Merge version 2.16.0+ds-7+rpi1 and 2.17.0+ds-6 to produce 2.17.0+ds-6+rpi1 --- 2c5a11c51ae3c41e89abadb5b68873c70b9cc9c5 diff --cc debian/changelog index a0b0bc92,e64a878d..4ed5d5e3 --- a/debian/changelog +++ b/debian/changelog @@@ -1,9 -1,68 +1,75 @@@ - ncbi-blast+ (2.16.0+ds-7+rpi1) trixie-staging; urgency=medium ++ncbi-blast+ (2.17.0+ds-6+rpi1) forky-staging; urgency=medium + + [changes brought forward from 2.16.0+ds-6+rpi1 by Peter Michael Green at Sun, 12 Jan 2025 14:25:01 +0000] + * Link with libatomic on armhf too. + - -- Raspbian forward porter Thu, 21 Aug 2025 18:11:58 +0000 ++ -- Raspbian forward porter Sun, 01 Feb 2026 14:12:52 +0000 ++ + ncbi-blast+ (2.17.0+ds-6) unstable; urgency=medium + + * debian/patches/support_x32: Unbreak 64-bit builds. + + -- Aaron M. Ucko Fri, 17 Oct 2025 11:26:19 -0400 + + ncbi-blast+ (2.17.0+ds-5) unstable; urgency=medium + + * debian/patches/support_x32: Fix wgsread.cpp for 32-bit architectures. + (Closes: #1117023.) + + -- Aaron M. Ucko Fri, 17 Oct 2025 10:12:47 -0400 + + ncbi-blast+ (2.17.0+ds-4) unstable; urgency=medium + + * debian/patches/support_x32: Correctly broaden configure(.ac)'s VDB + allow-list. (Closes: #1117023.) + + -- Aaron M. Ucko Thu, 16 Oct 2025 17:24:56 -0400 + + ncbi-blast+ (2.17.0+ds-3) unstable; urgency=medium + + * debian/control: Restrict armv8crc-support dependency to arm64. + * debian/patches/support_x32: Slightly broaden configure(.ac)'s VDB + allow-list. (Closes: #1117023.) + * debian/patches/zcf-simde-crc32c: Leave CFLAGS alone on 32-bit ARM; + adjustments aren't actually worthwhile there and would have needed to + go further on armhf, on which (at least under GCC) ARMv8 targets + additionally need +simd. (Closes: #1117022.) + + -- Aaron M. Ucko Thu, 16 Oct 2025 16:15:12 -0400 + + ncbi-blast+ (2.17.0+ds-2) unstable; urgency=medium + + * debian/control: + - Additionally build-depend on libsimde-dev. + - Require CRC support on ARM per upstream. + * debian/patches/zcf-simde-crc32c (new): Replace Cloudflare deflate.c's + fallbackless architecture-dependent code with a SIMDE invocation that + amounts to the same thing on supported architectures and to a portable + fallback elsewhere. + + -- Aaron M. Ucko Wed, 01 Oct 2025 14:43:25 -0400 + + ncbi-blast+ (2.17.0+ds-1) unstable; urgency=medium + + * New upstream release. + * debian/control: + - Require SSE 4.2 on x86 per upstream. + - Reformat via "cme fix dpkg-control" (routine-update). + * debian/copyright: + - Update with more help from lrc. + - Clean up whitespace (routine-update). + * debian/ncbi-blast+.lintian-overrides: Override embedded-library zlib + for libzcf.so, which is Cloudflare's fork. + * debian/patches: Update for new release, mostly formally. + * debian/patches/series: Comment out support_mbedtls3, allow_pcre2, + and fix_bm_for_gcc15, all incorporated upstream. + * debian/patches/system_mbedtls_only: Drop code changes (incorporated + upstream) and port Makefile.connssl.lib's changes. + * debian/rules: Explicitly supply VDB_LIBDIR to configure to avoid a bad + interaction that led to spurious runpath entries in binaries linked + against VDB. + + -- Aaron M. Ucko Sun, 28 Sep 2025 23:08:59 -0400 ncbi-blast+ (2.16.0+ds-7) unstable; urgency=medium